@Professor Kent: The point is that …

Comment on An apology to PUC by Sean Pitman.

@Professor Kent:

The point is that the term “macroevolution” is meaningless without a standard definition of “species”; or at least an up front clarification as to which species definition one is using in a discussion of origins. – Sean Pitman

Sean, the problem with existing species concepts, and therefore the currently used term for “macroevolution,” is that the entire enterprise of taxonomy is based on an effort to categorize variation that is continuous into discrete compartments. All biologists recognize this problem, yet existing species concepts and operational definitions lead to agreement on probably 95-99% of classifications. Only a small percentage are quibbled over…and, of course, creationists look to anything they can to criticize conventional science. To state that these scientists are not “up front” is misleading. They publish, argue, and publish some more. The creationists only argue.

I thought you were a “creationist”? 😉

When you’re in a discussion with a creationist over the potential and limits of the evolutionary mechanisms you need to clarify which definition for “species”, among a great many out there, that you are using. Certain definitions of “species” are well within what creationists accept as within the power of RM/NS to achieve. However, certain definitions of “species” are not within the rational power of RM/NS to achieve – even given a practical eternity of time.

The limits to RM/NS come in the form of novel functional changes. If you’re talking about functionally neutral definitions of “species”, there is no real problem. However, if you’re talking about qualitative functional differences, problems quickly arise because of the exponential decline of RM/NS with each increase in the functional complexity of the differences under consideration.

I’m sure you won’t accept this, but the problems with your definitions of “species” and, hence, “macroevolution,” are manyfold. First, you are the only one using them. Second, your definitions have not been published (nor will they ever in a journal with an impact factor of 1.0 or more). Third, they lack operational clarity; no one is really able to look at two populations of squid, or kangaroo rats, or tortoises, for example, and readily quantify which differences are “functional” and which are not. Any measures of “functionality” will undoubtedly be continuously distributed, so the question becomes: how functionally different is “functional?” Fourth, your definitions haven’t been tested by application to real data in thousands of case-by-case studies, so we have no idea how well they perform and whether they are superior to other definitions. Fifth, your definitions undoubtedly suffer from the same fundamental problem as the others (as I’ve already mentioned for measuring “functional”): no matter what criteria one uses, one simply cannot partition continuous variation into neat and tidy boxes.

My definition for functional complexity is quite straight forward and has been published in mainstream journals. The concept of a “level” of functional complexity being based on a minimum size and specificity of arrangement to achieve a particular type of function is not new nor did it originate with me.

For example, Hazen et. al. define functional complexity as follows:

1.
n, the number of letters in the sequence.

2.
Ex, the degree of function x of that sequence. In the case of the fire example cited above, Ex might represent the probability that a local fire department will understand and respond to the message (a value that might, in principle, be measured through statistical studies of the responses of many fire departments). Therefore, Ex is a measure (in this case from 0 to 1) of the effectiveness of the message in invoking a response.

3.
M(Ex), the total number of different letter sequences that will achieve the desired function, in this case, the threshold degree of response, rEx. The functional information, I(Ex), for a system that achieves a degree of function, rEx, for sequences of exactly n letters is therefore

I(Ex)= – log2 [M(Ex) / Cn]

(C = number of possible characters per position)

Robert M. Hazen, Patrick L. Griffin, James M. Carothers, and Jack W. Szostak, Functional information and the emergence of biocomplexity, 8574-8581| PNAS | May 15, 2007 | vol. 104 | suppl. 1

http://www.detectingdesign.com/flagellum.html#Calculation

What is also interesting is that Hazen et. al. go on to note that, “In every system, the fraction of configurations, F(Ex), capable of achieving a specified degree of function will generally decrease with increasing Ex.” And, according to their own formulas, this decrease is an exponential decrease with each linear increase in n – or the number of “letters” or characters (or in this case amino acid residues), at minimum, required by the system to achieve the beneficial function in question.

I suggest a little humility when you assert that your definitions are superior to those that have been tested in real time by real scientists using real data.

What I suggest is that you try to realize that the debate between mainstream scientists and creationists isn’t over neutral evolution or differences in functionality that are not qualitatively unique. Rather, the debate is over the potential of RM/NS to produce qualitatively novel functionality within a given gene pool beyond very very low levels of functional complexity in a reasonable amount of time. That is the only definition of “macroevolution” or “species” that is relevant in a conversation such as this because that is the only definition over which there is any real disagreement between creationists and evolutionists…

Sean Pitman
www.DetectingDesign.com

Sean Pitman Also Commented

An apology to PUC
@Anon MD:

I am disturbed by much of what I read here. According to Educate Truth’s new policies, professors can no longer teach faith; they can only teach what the “evidence” allows. Professors can no longer teach both sides and allow the student to form their own opinion; they must believe and teach that the weight of evidence supports their views. Professors can no longer teach their conscience; fear of being subjected to public humiliation will hereafter dictate what they teach. Surely Ellen White would roll over in her grave if she learned of the new fear-based pedagogical approach that is slowly taking over our institutions. Good work, Educate Truth!

Have you not read about the time when Mrs. White publicly addressed the Church body telling everyone to avoid sending their children to Battle Creek College because of their promotion of ideas which were not in harmony with the goal and mission of the Church? “In God’s word alone,” she wrote, “we find an authentic account of creation” (5 Test., 25). She displayed a willingness to both publicly rebuke the leadership of the college and to warn church members of the problems at the College. “We can give,” she memorably warned, “no encouragement to parents to send their children to Battle Creek College” (5 Test., 21). She proposed that if the College was not returned to the Biblical-centered model, that the church should “sell it out to worldlings” and “establish another school” upon the “plan which God has specified” (5 Test., 25-26). – Link

Also, have you not read the GC’s request of educators when it comes to what the Church, as an organization, expects its teachers to actually teach? The following is from the 2004 Executive Committee of the General Conference of Seventh-day Adventists:

We call on all boards and educators at Seventh-day Adventist institutions at all levels to continue upholding and advocating the church’s position on origins. We, along with Seventh-day Adventist parents, expect students to receive a thorough, balanced, and scientifically rigorous exposure to and affirmation of our historic belief in a literal, recent six-day creation, even as they are educated to understand and assess competing philosophies of origins that dominate scientific discussion in the contemporary world.

http://adventist.org/beliefs/statements/main-stat55.html

This sentiment and request was backed up at the most recent GC session in Atlanta. And, the Church has also decided to make more specific the wording of FB#6 on its creation doctrine – in order to make it very clear that the Church, as an organization, believes in a literal 6-day creation week and worldwide Noachian Flood.

Now, you can call such a position “extreme” all you want, but the Church seems to know that hiring teachers to tell our young people that the weight of scientific evidence is against us is quite counterproductive to the Church’s goals and ideals…

Regardless, at the very least, people have a right to know and to choose if such an education is in fact what they want for their own children…

Sean Pitman
http://www.DetectingDesign.com


An apology to PUC
@Ervin Taylor:

There are probably a number of retired Adventist scientists who would relish the idea of writing a review of any book that Sean would write. Although I obviously can’t speak for the current editor, I’m reasonably confident that Adventist Today would be very interested in publishing reviews of that book. If someone still working for an Adventist college or university might have some reticence in putting their name on their review, I would think that an appropriate arrangement could be made.

I have actually written and self-published a little book this year, “Turtles All the Way Down – Questions on Origins”. It can be ordered from my website using PayPal or from Amazon (a bit cheaper from my website). And, by all means, you are welcome to review it if you so wish…

Sean Pitman
www.DetectingDesign.com


An apology to PUC
@ken:

Dear Bob

Are you saying that all variations of a single genome must have the same number of chromosomes?

The same functional type of gene pool can have different numbers of chromosomes. For example, horses have 32 pairs of chromosomes while donkeys have only 31 pairs. Yet, they can mate and produce viable offspring (i.e., mules and hinnies). Therefore, they are part of the same functional gene pool of underlying genetic options.

For a further discussion of having the same basic type of functional information in different chromosomal arrangements or places, see:

http://www.detectingdesign.com/donkeyshorsesmules.html

Sean Pitman
www.DetectingDesign.com


Recent Comments by Sean Pitman

Science and Methodological Naturalism
Very interesting passage. After all, if scientists are honest with themselves, scientific methodologies are well-able to detect the existence of intelligent design behind various artifacts found in nature. It’s just the personal philosophy of scientists that makes them put living things and the origin of the fine-tuned universe “out of bounds” when it comes to the detection of intelligent design. This conclusion simply isn’t dictated by science itself, but by a philosophical position, a type of religion actually, that strives to block the Divine Foot from getting into the door…


Revisiting God, Sky & Land by Fritz Guy and Brian Bull
@Ron:

Why is it that creationists are afraid to acknowledge the validity of Darwinism in these settings? I don’t see that these threaten a belief in God in any way whatsoever.

The threat is when you see no limitations to natural mindless mechanisms – where you attribute everything to the creative power of nature instead of to the God of nature.

God has created natural laws that can do some pretty amazing things. However, these natural laws are not infinite in creative potential. Their abilities are finite while only God is truly infinite.

The detection of these limitations allows us to recognize the need for the input of higher-level intelligence and creative power that goes well beyond what nature alone can achieve. It is here that the Signature of God is detectable.

For those who only hold a naturalistic view of the universe, everything is attributed to the mindless laws of nature… so that the Signature of God is obscured. Nothing is left that tells them, “Only God or some God-like intelligent mind could have done this.”

That’s the problem when you do not recognize any specific limitations to the tools that God has created – when you do not recognize the limits of nature and what natural laws can achieve all by themselves.

Sean Pitman
www.DetectingDesign.com


Revisiting God, Sky & Land by Fritz Guy and Brian Bull
@Bill Sorensen:

Since the fall of Adam, Sean, all babies are born in sin and they are sinners. God created them. Even if it was by way of cooperation of natural law as human beings also participated in the creation process.

God did not create the broken condition of any human baby – neither the physical or moral brokenness of any human being. God is responsible for every good thing, to include the spark or breath of life within each one of us. However, He did not and does not create those things within us that are broken or bad.

“The owner’s servants came to him and said, ‘Sir, didn’t you sow good seed in your field? Where then did the weeds come from?’ ‘An enemy did this,’ he replied. “The servants asked him, ‘Do you want us to go and pull them up?'” Matthew 13:27-28

Of course, all humans are indeed born broken and are in a natural state of rebellion against God. However, God is not the one who created this condition nor is God responsible for any baby being born with any kind of defect in character, personality, moral tendency, or physical or genetic abnormality. God did not create anyone with such brokenness. Such were the natural result of rebellion against God and heading the temptations of the “enemy”… the natural result of a separation from God with the inevitable decay in physical, mental, and moral strength.

Of course, the ones who are born broken are not responsible for their broken condition either. However, all of us are morally responsible for choosing to reject the gift of Divine Grace once it is appreciated… and for choosing to go against what we all have been given to know, internally, of moral truth. In other words, we are responsible for rebelling against the Royal Law written on the hearts of all mankind.

This is because God has maintained in us the power to be truly free moral agents in that we maintain the Power to choose, as a gift of God (Genesis 3:15). We can choose to accept or reject the call of the Royal Law, as the Holy Spirit speaks to all of our hearts…

Remember the statement by Mrs. White that God is in no wise responsible for sin in anyone at any time. God is working to fix our broken condition. He did not and does not create our broken condition. Just as He does not cause Babies to be born with painful and lethal genetic defects, such as those that result in childhood leukemia, He does not cause Babies to be born with defects of moral character either. God is only directly responsible for the good, never the evil, of this life.

Sean Pitman
www.DetectingDesign.com


Revisiting God, Sky & Land by Fritz Guy and Brian Bull
@Ron:

Again, your all-or-nothing approach to the claims of scientists isn’t very scientific. Even the best and most famous of scientists has had numerous hair-brained ideas that were completely off base. This fact does not undermine the good discoveries and inventions that were produced.

Scientific credibility isn’t based on the person making the argument, but upon the merits of the argument itself – the ability of the hypothesis to gain predictive value when tested. That’s it.

Sean Pitman
www.DetectingDesign.com


Gary Gilbert, Spectrum, and Pseudogenes
Don’t be so obtuse here. We’re not talking about publishing just anything in mainstream journals. I’ve published several articles myself. We’re talking about publishing the conclusion that intelligent design was clearly involved with the origin of various artifactual features of living things on this planet. Try getting a paper that mentions such a conclusion published…

Sean Pitman
www.DetectingDesign.com